Journal: Molecular Cancer
Article Title: Dynamic altruistic cooperation within breast tumors
doi: 10.1186/s12943-023-01896-7
Figure Lengend Snippet: Lateral inhibition maintains a sparse spatial organization of altruists. A Immunoblotting to detect indicated proteins extracted from Mi/EGFP High and Mi/EGFP Low fractions from indicated cancer cell lines. B,C Mi/EGFP Low and Mi/EGFP High cells from indicated cancer cell lines were exposed to conditioned media harvested from separate batches of Mi/EGFP Low and Mi/EGFP High cells. After four days, the formers’ fluorescence levels were analyzed by FACS (B) and extracted protein of exposed Mi/EGFP Low cell studied by immunoblotting (C). D, E Mi/EGFP Low cells from indicated cell lines were treated with indicated recombinant proteins in combination with neutralizing antibodies and the fluorescence level analyzed by FACS after four days. F-H Mi/EGFP Low cell fractions from indicated cancer cell lines, transfected with control or GAB1 siRNA, were exposed to recombinant IGFBP2 or CCL28. After four days, their fluorescence levels were analyzed by FACS (F, IGFBP2; G, CCL28) and their extracted protein by immunoblotting (H). CM-R: Mi/EGFP Low recipient cells exposed to recombinant protein. I Box plots of fold change in enrichment of GAB1 mRNA pulled-down using biotinylated miR-125b mimics. J Relative luciferase activities of HEK293T cells following transfection of wild-type or mutant reporter construct for GAB1 and indicated mimics. WT: wild type. K Immunoblotting to detect expression of indicated proteins extracted from miR-125b m or Control m -transfected MCF7 or MDA-MB-468 cells with or without docetaxel treatment (Upper), or miR-125b LNA-inhibitor- or control-LNA-transfected MDA-MB-231 or MDA-MB-415 cells (Lower). L,M Schema of lateral inhibition model mediated by diffusible IGFBP2 and CCL28 secreted by miR-125b High altruists. Upon exposure to IGFBP2 and CCL28, heightened PI3K-AKT signaling is induced in the recipient cells, resulting in reduction in miR-125b expression and adoption of the non-altruistic social fate (L). Hypothesized level of the diffusible proteins, extent of PI3K activation and probability of altruist arising as the distance from altruist increases is depicted, in association with the altruist’s ability to influence social fates beyond the immediate neighboring cells (M). N Simulation of lateral inhibition dynamics showing pattern generation when diffusion coefficient d = 1 (as in the case of Notch-Delta signaling) and d>1 (mediated by diffusible proteins such as IGFBP2 and CCL28) (Left column). Spatial patterns of Mi/EGFP High and Mi/EGFP Low cells in indicated cell lines, with or without IGFBP2 & CCL28 antibodies treatment, are shown (Center and Right columns). Experiments repeated two times, representative data are shown for (A-H, K, N). Mean percentage ± s.d. cells for technical triplicates of representative set are shown in same colour as corresponding histograms (B,D-G). Data are mean ± s.d. from three independent biological sets of triplicates (I, J). Statistical analysis was performed using two-tailed one sample t -test against 1 (I) or 100 (J). NT: no treatment; DTX: docetaxel treatment. Exact P values are shown
Article Snippet: CD45 (MCA87A647; Biorad), EpCAM (324206; BioLegend), digoxigenin (DIG) ( 11093274910 ; Roche), GFP (2555; Cell Signaling Technology), polyclonal IGFBP2 (3922; Cell Signaling Technology), monoclonal IGFBP2 (ab109284; Abcam), monoclonal IGFBP2 (MAB6741-SP; R&D Systems), monoclonal CCL28 (ab192600; Abcam), polyclonal CCL28 (ab196567; Abcam), monoclonal CCL28 (MAB717-SP; R&D Systems), monoclonal CCL28 (sc-376654, Santa Cruz Biotechnology), Bak1 (12105; Cell Signaling Technology), beta actin (sc-47778; Santa Cruz), H3ac (61637; Active Motif), GAPDH (sc-137179; Santa Cruz), histone H4ac (39243; Active Motif), PCAF (3378; Cell Signaling Technology), KLF2 (sc-28675X; Santa Cruz), Cas9 (61757; Active Motif), ChIP negative control IgG (53026; Active Motif), luciferase (NB600-307; Novus Biologicals), IGF-1R (AF-305-NA; R&D Systems), integrin α5 (AF1864; R&D Systems), integrin β1 (AF-1778-SP; R&D Systems), integrin αV (ab94704; Abcam), integrin β3 (AF-2266-SP; R&D Systems), integrin α2b (ab63983; abcam), CCR10 (MAB3478; R&D Systems), CCR3 (PAB13065; Abnova), CD24 (311118; BioLegend), CCNA2 (4656, Cell Signaling Technology).
Techniques: Inhibition, Western Blot, Fluorescence, Recombinant, Transfection, Control, Luciferase, Mutagenesis, Construct, Expressing, Activation Assay, Diffusion-based Assay, Two Tailed Test